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  2. Pipeline for interpretation and storage of organelle proteomics data
  3. Donate to arXiv
  4. Submission history
  5. [] Organelle proteomics

Identification and proteomic profiling of exosomes in human urine. USA , — Gagnon, E. Endoplasmic reticulum-mediated phagocytosis is a mechanism of entry into macrophages. Cell , — Desjardins, M. ER-mediated phagocytosis: a new membrane for new functions. Houde, M. Phagosomes are competent organelles for antigen cross-presentation.

Nature , — This study validated the presence of ER proteins in the phagolysosome proteome, which led to a link between ER recruitment and the phenomenon of antigen cross-presentation. Ng Yan Hing, J. Proteomic analysis reveals a role for protein kinase C-a in phagosome maturation. Wasiak, S. Enthoprotin: a novel clathrin-associated protein identified through subcellular proteomics. Cell Biol. Blondeau, F. Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling.

These authors showed an important function for brain CCVs in recycling synaptic vesicles, which supports a full-fusion model for synaptic vesicle exocytosis. They also identified the novel protein enthoprotin, which has a known link to schizophrenia. Ritter, B. Identification of a family of endocytic proteins that define a new a-adaptin ear-binding motif. EMBO Rep. EMBO J. Pimm, J. The epsin 4 gene on chromosome 5q, which encodes the clathrin-associated protein enthoprotin, is involved in the genetic susceptibility to schizophrenia.

Taylor, S. Characterization of the human heart mitochondrial proteome. Gaucher, S. Expanded coverage of the human heart mitochondrial proteome using multidimensional liquid chromatography coupled with tandem mass spectrometry. Sickmann, A. The proteome of Saccharomyces cerevisiae mitochondria. Mootha, V. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Prokisch, H. Integrative analysis of the mitochondrial proteome in yeast. PLoS Biol. Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.

Marelli, M. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. Knoblach, B. ERp19 and ERp46, new members of the thioredoxin family of endoplasmic reticulum proteins. Proteomics 2 , — Breuza, L. Otte, S. Belden, W. Role of Erv29p in collecting soluble secretory proteins into ER-derived transport vesicles.

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Science , — Taylor, R. Proteomics of rat liver Golgi complex: minor proteins are identified through sequential fractionation. Electrophoresis 21 , — Proteomic analysis of two functional states of the Golgi complex in mammary epithelial cells. Traffic 1 , — Bell, A. Proteomics characterization of abundant Golgi membrane proteins. Organellar proteomics reveals Golgi arginine dimethylation. Cell 15 , — These authors used MudPIT to study the Golgi proteome, and identified arginine dimethylation as a novel cytoplasmic post-translational modification.

GMx a novel family of trans -Golgi proteins identified by proteomics. Novikoff, A. Golgi apparatus and lysosomes. Ladinsky, M. Golgi structure in three dimensions: functional insights from the normal rat kidney cell. Smith, C. Hanada, K. Molecular machinery for non-vesicular trafficking of ceramide. Ferro, M. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Bagshaw, R. A proteomics analysis of lysosomal integral-membrane proteins reveals the diverse composition of the organelle. Dermine, J. Flotillinenriched lipid raft domains accumulate on maturing phagosomes.

Rout, M. The yeast nuclear pore complex: composition, architecture, and transport mechanism. One of the pioneering organelle proteomics studies. Discovered a Brownian-affinity-gating mechanism for nucleocytoplasmic transport. Cronshaw, J. Proteomic analysis of the mammalian nuclear pore complex. Schirmer, E. Nuclear membrane proteins with potential disease links found by subtractive proteomics. Andersen, J. Nucleolar proteome dynamics.

Nature , 77—83 A quantitative temporal proteomics study, which identified proteins that are recruited to or lost from the nucleolus following transcription or proteasome inhibition. Huh, W. Global analysis of protein localization in budding yeast. Directed proteomic analysis of the human nucleolus. Beausoleil, S. Large-scale characterization of HeLa cell nuclear phosphoproteins. Oh, P. Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy. A silica-coated-bead methodology was used to isolate the plasma membrane of lung endothelial cells.

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  • Cambridge Researchers Outline Best Practices for Analysis of Organelle Proteomics Data;
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Two proteins were shown to be lung endothelium specific and cell-surface exposed. Annexin A1 was identified as a novel target for cancer treatment. Shin, B. Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. Tam, E. Membrane protease proteomics: isotope-coded affinity tag MS identification of undescribed MT1-matrix metalloproteinase substrates.

Zhang, W. Affinity enrichment of plasma membrane for proteomics analysis. Electrophoresis 24 , — Nuhse, T. Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 16 , — Nielsen, P. Proteomic mapping of brain plasma membrane proteins.

Bottom-up proteomics and top-down proteomics

Amar-Costesec, A. Analytical study of microsomes and isolated subcellular membranes from rat liver. Preparation and composition of the microsomal fraction. Munro, S. Lipid rafts: elusive or illusive? Cell , —88 Foster, L. Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors.

Li, N. Bini, L. Extensive temporally regulated reorganization of the lipid raft proteome following T-cell antigen receptor triggering. Chuong, S. Large-scale identification of tubulin-binding proteins provides insight on subcellular trafficking, metabolic channeling, and signaling in plant cells. Proteomics 3 , — Dougherty, M. Unlocking the code of Cell Sci. Jin, J. Proteomic, functional, and domain-based analysis of in vivo binding proteins involved in cytoskeletal regulation and cellular organization. Nebl, T.


Proteomic analysis of a detergent-resistant membrane skeleton from neutrophil plasma membranes. Proteomic characterization of the human centrosome by protein correlation profiling. Sauer, G. Proteome analysis of the human mitotic spindle. Proteomics 4 , 35—43 Skop, A. Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms. Science , 61—66 Identified novel proteins that have a role in cytokinesis, and indicated a role for the ER chaperone GRP94 in chromosome segregation.

Devaney, E. Immuno-isolation of a plasma membrane fraction from the Fao cell. Kamrath, F.

Journal of Integrated OMICS, Vol 2, No 2 (2012)

The isolation of lysosomes from normal rat liver by affinity chromatography. Hoppe Seyler's Z. Phagocytosis: latex leads the way. Durr, E. Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Gibbs, R. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Waterston, R. Initial sequencing and comparative analysis of the mouse genome.

Venter, J. The sequence of the human genome. Lander, E. Initial sequencing and analysis of the human genome. International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Adams, M. The genome sequence of Drosophila melanogaster. Goffeau, A. Life with genes. The C. Genome sequence of the nematode C. Henzel, W. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. USA 90 , — Peptide mass maps: a highly informative approach to protein identification.

James, P. Protein identification by mass profile fingerprinting. Pappin, D. Rapid identification of proteins by peptide-mass fingerprinting. The Social Determinants of Health is a scientific peer-reviewed multi-disciplinary journal affiliated to the Social Determinants of Health Research Center. The journal scheduled to appear quarterly and serve as a means for scientific information exchange in the international SDH forum. The extended scope of the journal is intended to include not only social determinants of health, but also other affiliated fields and disciplines that contribute to the current knowledge and science of community medicine, social medicine, public health, health economics, health education, health policy, and epidemiology.

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Pipeline for interpretation and storage of organelle proteomics data

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